Computational Omics Consulting
From raw data to discovery.
One project at a time.
Fixed-price, project-based bioinformatics consulting for labs and biotech teams. scRNA-seq, multi-omics integration, public data mining, AI assessment, and statistical review.
Services
Five scoped offerings, each with a fixed price and a structured deliverable.
Data Analysis & Interpretation
Raw data to publication-ready results. QC, troubleshooting, and custom analyses across all omics modalities.
- Bulk/scRNA-seq, ATAC-seq, CITE-seq, proteomics, metabolomics, spatial
- Differential analysis to pathway enrichment to publication figures
- QC troubleshooting for problematic datasets
- Structured methods + results document
Public Data Discovery
New biology from existing data. Mine public repositories to validate hypotheses or uncover novel signals.
- Hypothesis validation from GEO, TCGA, GTEx, SRA, ENCODE
- Custom re-analysis of published studies from raw data
- Grant-ready preliminary data and figures
- Full pipeline: FASTQ to discovery
Methods & Statistics Audit
Statistical review that shuts down reviewer concerns. Experimental design, power analysis, batch effects, multiple testing.
- Analysis methodology audit and experimental design review
- Power analysis and multiple testing correction strategy
- Batch effect diagnosis and remediation
- Reviewer-ready methods appendix
Multi-Omics Integration
Cross-modality modeling that reveals the full biological picture, not just stacking datasets together.
- Cross-omics integration (transcriptome x proteome x epigenome)
- Latent factor analysis and signal decomposition
- Systematic batch effect evaluation across modalities
- Fully reproducible pipeline
AI Strategy & Deep Learning Assessment
Which AI tools actually work on your data. Honest assessment, not hype. Foundation models to custom architectures.
- Evaluate foundation models (scGPT, Geneformer, protein LMs) on your data
- Honest assessment: what adds value vs. what is overhead
- Configured, documented pipeline for your data type
- Custom deep learning architecture design
How It Works
From first conversation to delivered report.
Free Scoping Call
30-minute call to understand your data, your question, and your timeline. No commitment.
Fixed-Price Proposal
One-page proposal with deliverables, timeline, data handling terms, and a single fixed price.
Analysis & Checkpoints
I run the analysis, share interim results, and incorporate your feedback at agreed milestones.
Final Report
Structured report with methods, results, visualizations, and actionable conclusions. Code and data included.
About
I am a computational systems biologist with 15+ years of research experience and publications in Nature Biotechnology, Cell Systems, and iScience. My work sits at the intersection of multi-omics integration, machine learning, and systems biology — decoding high-dimensional data into biological insight.
I take on a limited number of consulting projects each quarter. Every engagement is a fixed-price, one-off project. No retainers, no long-term commitment, no overhead. If your data has a question it is not answering, I can help.
- scRNA-seq and bulk transcriptomics
- Multi-omics integration
- Public data mining (GEO, TCGA, GTEx)
- Statistical review and audit
- AI/deep learning model evaluation
- Reproducible pipeline engineering
Testimonials
What past collaborators and clients have said about working together.
FAQs
What data types do you work with?
scRNA-seq, bulk RNA-seq, ATAC-seq, CITE-seq, proteomics (mass-spec), metabolomics, spatial transcriptomics, and any combination of these for multi-omics integration.
Do I need a long-term contract?
No. Every engagement is a one-off, fixed-price project. No retainers, no minimums, no ongoing commitment.
How do you handle confidentiality?
All data stays in secure, access-controlled environments. I sign NDAs and data processing agreements as standard practice. No client data is used for content or shared publicly.
How does fixed-price work if the scope changes?
After a free scoping call, I quote a single price for the full deliverable. If the scope shifts mid-project, we agree on an adjustment before any additional work begins. You never pay for work you did not authorize.
Not sure which service fits?
Describe your data and what you need. I will recommend the right scope and give you a fixed price. No charge for the conversation.
Book a Free 30-Min Call